Search results for "Bayesian [statistical analysis]"
showing 10 items of 299 documents
Some contributions in disease mapping modeling
2020
Disease mapping ha recibido un gran interés durante las tres últimas décadas. Esta área de investigación persigue el estudio de la distribución geográfica de eventos relacionados con la salud, tales como la mortalidad o la incidencia de enfermedades, agregados en unidades geográficas, con el fin de identificar principalmente aquellas localizaciones que presentan un mayor riesgo. La aplicación de métodos estadísticos avanzados para llevar a cabo las estimaciones de los riesgos resulta fundamental para obtener estimaciones precisas y profundizar en el entendimiento de la distribución geográfica de las enfermedades. En esta tesis nos centramos en la aplicación y evaluación de varias propuestas…
A Bayesian Multilevel Random-Effects Model for Estimating Noise in Image Sensors
2020
Sensor noise sources cause differences in the signal recorded across pixels in a single image and across multiple images. This paper presents a Bayesian approach to decomposing and characterizing the sensor noise sources involved in imaging with digital cameras. A Bayesian probabilistic model based on the (theoretical) model for noise sources in image sensing is fitted to a set of a time-series of images with different reflectance and wavelengths under controlled lighting conditions. The image sensing model is a complex model, with several interacting components dependent on reflectance and wavelength. The properties of the Bayesian approach of defining conditional dependencies among parame…
Bayesian applications in dynamic econometric models
2009
The purpose of this thesis is to provide a few new ideas to the field of Bayesian econometrics. In particular, the focus of the thesis is on analyzing dynamic econometric models. In the first essay, we provide an easily implementable method for the Bayesian analysis of a simple hybrid DSGE model of Clarida et al. (1999). The forecasting properties of the model are tested against commonly used forecasting tools, such as Bayesian VARs and naïve forecasts based on univariate random walks. In particular, the predictability of three key macroeconomic-variables, inflation, short-term nominal interest rate and a measure of output gap, are studied using quarterly ex post and real-time U.S. data.Our…
Physics-Aware Gaussian Processes for Earth Observation
2017
Earth observation from satellite sensory data pose challenging problems, where machine learning is currently a key player. In recent years, Gaussian Process (GP) regression and other kernel methods have excelled in biophysical parameter estimation tasks from space. GP regression is based on solid Bayesian statistics, and generally yield efficient and accurate parameter estimates. However, GPs are typically used for inverse modeling based on concurrent observations and in situ measurements only. Very often a forward model encoding the well-understood physical relations is available though. In this work, we review three GP models that respect and learn the physics of the underlying processes …
CiliaCarta: An integrated and validated compendium of ciliary genes
2019
The cilium is an essential organelle at the surface of mammalian cells whose dysfunction causes a wide range of genetic diseases collectively called ciliopathies. The current rate at which new ciliopathy genes are identified suggests that many ciliary components remain undiscovered. We generated and rigorously analyzed genomic, proteomic, transcriptomic and evolutionary data and systematically integrated these using Bayesian statistics into a predictive score for ciliary function. This resulted in 285 candidate ciliary genes. We generated independent experimental evidence of ciliary associations for 24 out of 36 analyzed candidate proteins using multiple cell and animal model systems (mouse…
Efficient Online Laplacian Eigenmap Computation for Dimensionality Reduction in Molecular Phylogeny via Optimisation on the Sphere
2019
Reconstructing the phylogeny of large groups of large divergent genomes remains a difficult problem to solve, whatever the methods considered. Methods based on distance matrices are blocked due to the calculation of these matrices that is impossible in practice, when Bayesian inference or maximum likelihood methods presuppose multiple alignment of the genomes, which is itself difficult to achieve if precision is required. In this paper, we propose to calculate new distances for randomly selected couples of species over iterations, and then to map the biological sequences in a space of small dimension based on the partial knowledge of this genome similarity matrix. This mapping is then used …
Hub-Centered Gene Network Reconstruction Using Automatic Relevance Determination
2012
Network inference deals with the reconstruction of biological networks from experimental data. A variety of different reverse engineering techniques are available; they differ in the underlying assumptions and mathematical models used. One common problem for all approaches stems from the complexity of the task, due to the combinatorial explosion of different network topologies for increasing network size. To handle this problem, constraints are frequently used, for example on the node degree, number of edges, or constraints on regulation functions between network components. We propose to exploit topological considerations in the inference of gene regulatory networks. Such systems are often…
Whole-Genome Re-Sequencing Data to Infer Historical Demography and Speciation Processes in Land Snails: the Study of Two Candidula Sister Species
2021
Despite the global biodiversity of terrestrial gastropods and their ecological and economic importance, the genomic basis of ecological adaptation and speciation in land snail taxa is still largely unknown. Here, we combined whole-genome re-sequencing with population genomics to evaluate the historical demography and the speciation process of two closely related species of land snails from western Europe, Candidula unifasciata and C. rugosiuscula. Historical demographic analysis indicated fluctuations in the size of ancestral populations, probably driven by Pleistocene climatic fluctuations. Although the current population distributions of both species do not overlap, our approximate Bayesi…
Hidden connections: Network effects on editorial decisions in four computer science journals
2018
Abstract This paper aims to examine the influence of authors’ reputation on editorial bias in scholarly journals. By looking at eight years of editorial decisions in four computer science journals, including 7179 observations on 2913 submissions, we reconstructed author/referee-submission networks. For each submission, we looked at reviewer scores and estimated the reputation of submission authors by means of their network degree. By training a Bayesian network, we estimated the potential effect of scientist reputation on editorial decisions. Results showed that more reputed authors were less likely to be rejected by editors when they submitted papers receiving negative reviews. Although th…
Bayesian survival analysis with BUGS
2020
Survival analysis is one of the most important fields of statistics in medicine and biological sciences. In addition, the computational advances in the last decades have favored the use of Bayesian methods in this context, providing a flexible and powerful alternative to the traditional frequentist approach. The objective of this article is to summarize some of the most popular Bayesian survival models, such as accelerated failure time, proportional hazards, mixture cure, competing risks, multi-state, frailty, and joint models of longitudinal and survival data. Moreover, an implementation of each presented model is provided using a BUGS syntax that can be run with JAGS from the R programmin…